Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs112880094 | chr19:53670934 | C/T | 1.6E-6 | 467 | 15.95 | 16.65 | 11.73 | KM Plot |
| THCA | rs112883152 | chr4:1081755 | C/T | 7.64E-9 | 478 | 16.37 | 14.1 | 18.6 | KM Plot |
| THCA | rs112991768 | chr10:105054464 | A/G | 1.31E-5 | 476 | 15.32 | 18.13 | 10.17 | KM Plot |
| THCA | rs11299621 | chr1:224367681 | TA/T | 4.43E-5 | 477 | 12.43 | 15.05 | 16.63 | KM Plot |
| THCA | rs112999652 | chr19:11595643 | G/A | 5.29E-7 | 489 | 15.9 | 15.58 | 33.97 | KM Plot |
| THCA | rs113002361 | chr2:48083029 | G/A | 9.89E-8 | 486 | 15.3 | 18.33 | 8.27 | KM Plot |
| THCA | rs113025336 | chr7:30075528 | T/C | 7.93E-5 | 484 | 15.13 | 16.57 | 15.32 | KM Plot |
| THCA | rs113030473 | chr10:81649031 | G/T | 0 | 482 | 15.9 | 17.23 | 5.92 | KM Plot |
| THCA | rs113104324 | chr10:7843017 | TTGAC/T | 7.86E-5 | 480 | 16.02 | 16.05 | 16.28 | KM Plot |
| THCA | rs113123791 | chr13:24892105 | C/T | 0.000317 | 486 | 15.17 | 17.77 | 17.08 | KM Plot |
| THCA | rs113141062 | chr2:29046484 | C/T | 0.000118 | 489 | 15.33 | 17.93 | 14.3 | KM Plot |
| THCA | rs113145598 | chr2:48040658 | C/G | 1.23E-7 | 486 | 15.23 | 17.53 | 8.27 | KM Plot |
| THCA | rs113172526 | chr10:81841421 | C/CA | 5.03E-5 | 476 | 15.65 | 17.77 | 6.03 | KM Plot |
| THCA | rs113185944 | chr10:104746374 | C/CT | 5.07E-9 | 488 | 15.2 | 17.83 | 32.1 | KM Plot |
| THCA | rs113190863 | chr6:24456424 | C/T | 1.96E-8 | 487 | 16.48 | 14.85 | 7.43 | KM Plot |